Institutional Repository
Thesis Issued 2026-09-03 EN

Detection and Identification of Begomoviruses Affecting Jute and Tomato in Bangladesh

Author: Md. Moniruzzaman Hasan

Abstract

Yellow mosaic disease is a major limiting factor for jute (Corchorus capsularis L.) cultivation in Bangladesh. We have cloned and sequenced three isolates of Corchorus golden mosaic virus (CoGMV) collected from different regions in Bangladesh. DNA A sequence of CoGMV-[BD:Mym:10] (BD1) shared highest identity (94.2%) with the Vietnam isolate of CoGMV, whereas DNA B shared a lower level of sequence identity (<73%) with the CoGMV isolates reported from Vietnam and India. Complete genome sequences of CoGMV-[BD:Ran:10] (BD2) and CoGMV-[BD:Din:10] (BD3) showed at least 97% sequence identity with Indian isolates of CoGMV. The fact that the examined DNA A components of three isolates of CoGMV lack the AV2 open reading frame, indicated that BD1-3 share genetic features of New World begomoviruses. The pathogenicity of CoGMV-[BD:Din:10] (BD3) isolate was confirmed by agroinoculation and infectious clones of DNA A and DNA B induced characteristic yellow mosaic symptoms in jute plants. This is a first experimental demonstration of Koch's postulate for a begomovirus associated with jute yellow mosaic disease. In situ hybridization was used to analyze the distribution pattern of Corchorus golden mosaic virus (CoGMV) CoGMV-[BD:Din:10] in jute plants. When CoGMV was inoculated onto the leaf petiole of a plant, it replicated and trafficked to sink. CoGMV was absent from shoot apical meristems. In the flowers of infected plants, CoGMV was present in the sepals, petals, stamens and ovary. The replicative form of CoGMV was detected in the phloem and seeds. Tomato leaf curl virus (ToLCV) has emerged as serious problem for tomato in the recent past, frequently in tropical and subtropical region of the world. Here, we have identified and characterized two isolates of tomato leaf curl virus (ToLCV) responsible for the leaf curl disease of tomato in Bangladesh. The complete genome sequences of ToLCV-[BD:Mym:11] and ToLCV-[BD:Mym2:11] shared the highest nucleotide sequence identities at 95.04 and 92.38 %, respectively, with Indian isolate of ToLCRaV and ToLCPaV-[Tob]. Complete nucleotide sequence analysis of two betasatellite clones (one each from (ToLCV-[BD:Mym:11] and (ToLCV-[BD:Mym2:11]) in BLAST search revealed 95.51 and 86.30% identity with ToLCBB and ToLCPaB, respectively.