Institutional Repository
Thesis Issued 2026-09-07 EN

Characterization of Sclerotinia sclerotiorum causing diseases of crops in Bangladesh and its management with antipathogenic Bacillus amyloliquefaciens

Author: Md. Muzahid-E-Rahman

Abstract

Sclerotinia sclerotiorum, as a newly emerged phytopathogen, was found to cause white mold disease of many plants including different fields and horticultural crops in recent years in Bangladesh. Biological control of white mold disease as eco-friendly approaches for sustainable management of the fungus is important. In this study, characterization of S. sclerotiorum and its biological control as ecofriendly approach with Bacillus spp. were studied. For characterization of S. sclerotiorum, a total of 36 fungal isolates were collected from infected plant parts of different hosts and their morpho-physiological characteristics were studied. Molecular detection up to species level was confirmed through internal transcribed spacer (ITS) sequencing. On the other hand, 15 effective Bacillus strains were selected from total of 150 bacterial isolates collected from rhizospheric soil samples and dead sclerotia of the fungus. Potential Bacillus strains were screened primarily by dual culture technique. Then they were characterized through different biochemical, and molecular analyses of 16S rDNA, gyrA and biosynthetic genes. The production of hydrolytic enzymes and plant growth-promotional attributes were studied. Antagonistic effect of Bacillus SsBB-1 isolate against the fungus was also studied by light and electron microscope. In vitro disease suppression, plant assay and plant growth promotion assay were conducted with the effective Bacillus isolate. Morpho-physiological and molecular characterization proved that all the fungal isolates were of S. sclerotiorum. Among the 15 potential Bacillus isolates, the most effective SsBB-1 isolate was confirmed as Bacillus amyloliquefaciens subsp. plantarum with different biochemical, and molecular analyses of 16S rDNA and gyrA gene. The production of hydrolytic enzymes and the plant growth-promotional attributes of the strain were confirmed in vitro assay. Molecular analyses of the eight biosynthetic genes revealed that the isolate SsBB-1 possess five genes: bacA for bacilysin, dfnM for difficidin, fenA for fengycin, ituA for iturin, and sfp for surfactin. The Bacillus SsBB-1 inhibited the growth and development of S. sclerotiorum in vitro test. Morphological deformities, blackening and pore formation on mycelia, abnormal apothecia and germination failure of ascospores were found with light and scanning electron microscope during antagonism study. Bacillus SsBB-1 protected mustard seedling up to 96.33% in vitro. In a pot experiment, infection of mustard plants with the fungus decreased more than 89.06% after foliar spray of Bacillus SsBB-1. The Bacillus SsBB-1 helped to increase seed germination and accelerated the plant growth-promoting abilities of the mustard plants.